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| 1 | Simulation of rainfall-runoff and watershed convergence process in the upper reaches of Heihe River Basin,July 2002显示文摘The watershed flow concentration scheme in the distributed hydrology-soil- vegetation model (DHSVM) is coupled with the mesoscale atmospheric model MM5 version 3.5, in which the Oregen States University land surface model (OSULSM) was involved. The flood event which happened in July 2002 in the upper reaches of Heihe river basin is simulated and the surface flow convergence process is shown with this coupled model. It has been concluded that times water head reaches each place of the basin are different. Water amount at each point is split-flow proportionally as the drops in elevation between it and neighbor points. Large part of the water amount pass away in greater slope direction and small part pass away in smaller slope one.Adding of the slope convergence makes the atmospheric model redistributes the surface water laterally. | GAO Yanhong L(U) Shihua CHENG Guodong | 2004 | Science China Earth Sciences2004，47，z1： | 13 |
| 2 | Dissecting the Genetic Basis of Grain Shape and Chalkiness Traits in Hybrid Rice Using Multiple Collaborative Populations显示文摘 | Junyi Gong Jiashun Miao Yan Zhao Qiang Zhao Qi Feng Qilin Zhan Benyi Cheng Junhui Xia Xuehui Huang Shihua Yang Bin Han | 2017 | Molecular Plant2017，10，10： | 8 |
| 3 | Fate of PM2.5-bound PAHs in Xiangyang, central China during 2018 Chinese spring festival: Influence of fireworks burning and air-mass transport显示文摘Variations of levels,possible source and air mass transmission were investigated for 16 USEPA priority-controlled PAHs in PM2.5 during 2018 Chinese Spring Festival(CSF)in Xiangyang City,central China which is the North-South pollutant airmass transport channel of China.Totally 37 samples were collected.Mass concentrations of 16 PAHs for the Pre–CSF day(Pre–CSFD),during the CSF day(CSFD)and after the CSF day(Af–CSFD)are 33.78±17.68 ng/m3,22.98±6.49 ng/m3,and 8.99±4.44 ng/m3,respectively.High resolution samples showed that 16 PAHs are higher in the morning(06:00–11:00)or afternoon(11:30–16:30),than those in the evening(17:00–22:00)and at night(22:30–05:30),whereas the result is reversed during the CSFD.Fireworks burning can obviously increase the mass concentration of PAHs.Air mass trajectory indicated that Xiangyang is a sink area of pollutants for northwest and southeast,and the sources of the northeast and southwest.The air mass only can be transmitted out through northeast and southwest.It is effective for improvement of air quality in Wuhan and Hunan to control fireworks emission in Henan and local areas.Fireworks burning was an important source for PAHs during CSFD,biomass,coal combustion,and traffic emission were the main sources of PAHs for Pre–CSFD and Af–CSFD periods.The health risk on the CSFD was higher than the acceptable levels,especially during the intensive fireworks burning,the risk value far exceed 1.0×10^-4,controlling burning fireworks is required. | Tianpeng Hu Yao Mao Weijie Liu Cheng Cheng Mingming Shi Zhanle Chen Qian Tian Jiaquan Zhang Shihua Qi Xinli Xing | 2020 | Journal of Environmental Sciences2020，32，11： | 6 |
| 4 | Effects of GS3 and GL3.1 for Grain Size Editing by CRISPR/Cas9 in Rice显示文摘Grain size is one of key agronomic traits associated with grain yield and grain quality. Both major quantitative trait loci GS3 and GL3.1 play a predominant role in negative regulation of grain size. In this study, a CRISPR/Cas9-mediated multiplex genome editing system was used to simultaneously edit GS3 and GL3.1 in a typical japonica rice Nipponbare. In T1 generation, we found that gs3 formed slender grain with lower chalkiness percentage, while gs3gl3.1 produced larger grain with higher chalkiness percentage. In terms of other agronomic traits, flag leaf size, grain number and grain yield of both gs3 and gs3gl3.1 mutants were affected. It is noteworthy that gs3 and gs3gl3.1 mutants both led to dramatical reduction of grain number, thereby decreased grain yield. In conclusion, these results indicated that knockout of GS3 and GL3.1 could rapidly improve grain size, but probably have some negative influences on grain quality and grain yield. | Chen Yuyu Zhu Aike Xue Pao Wen Xiaoxia Cao Yongrun Wang Beifang Zhang Yue Shah Liaqat Cheng Shihua Cao Liyong Zhang Yingxin | 2020 | Rice science2020，27，5： | 4 |
| 5 | Short-term climatic impacts of afforestation in the East Asian monsoon region显示文摘The influence of changes in vegetation cover on short-term climate over the East Asian monsoon region is simulated using the Community Climate System Model Version 3.5.The results show the annual mean surface air temperature significantly decreases by 0.93°C in response to afforestation over the East Asian monsoon region.Also,surface air temperature decreases by 1.46 and 0.40°C in summer and winter,respectively.The cooling is caused by enhanced evapotranspiration(ET) produced by increased forest cover.Evapotranspiration is greater in summer than in winter,so summer cooling is greater than winter cooling.The annual mean precipitation increases in response to afforestation,with a maximum of 7% in April.Water vapor increases significantly because of greater latent heat flux release.Meanwhile,afforestation leads to higher surface roughness,which decreases surface wind speed and induces an ascending air motion.These factors can produce more clouds and precipitation.Moreover,the surface albedo and the reflective solar radiation are reduced in response to afforestation. | MA Di LIU ZhengYu Lü ShiHua MICHAEL Notaro RONG XinYao CHENG GuangShan WANG FuYao | 2013 | Chinese Science Bulletin2013，58，18： | 3 |
| 6 | Super Rice Breeding in China显示文摘I. Demand for super high yield rice in China
Rice is one of the main staple food in China. The performance of rice sector in production and yield had been very impressive in the last four decades. However, rice production and yield has stagnated since 1990. | CHENG Shihua MIN Shaokai CNRRI Hangzhou 310006,China | 2001 | Chinese Rice Research Newsletter2001，9，2： | 2 |
| 7 | Quantitative Trait Loci Mapping for Rice Yield-Related Traits Using Chromosomal Segment Substitution Lines显示文摘Rice(Oryza sativa L.)is an important cereal crop,consumed as a staple by more than 50%of the global population(Gathala et al,2011).In Asian countries,the rice production increased to 695.5 million tones in the last years,and this increasing was caused by the main source of income and employment in these countries.Breeding high-yielding hybrid rice is a potentially promising solution for addressing food shortages caused by marked increases in the global population.Recent progress in DNA marker technology and the construction of linkage maps has enabled the detection of quantitative trait loci(QTLs)that regulate different agronomic traits applicable to breeding(Parida et al,2006;Zhang et al,2017). | LI Zihe Aamir RIAZ ZHANG Yingxin Galal Bakr ANIS ZHU Aike CAO Liyong CHENG Shihua | 2019 | Rice science2019，26，5： | 2 |
| 8 | Effect of surface roughness on the point contact EHL显示文摘 | ZHU Dong CHENG Shihua | 1988 | Tribology1988，110，1： | 1 |
| 9 | Breeding strategies for increasing yield potential in super hybrid rice显示文摘Super hybrid rice breeding is a new breeding method combining semi-dwarf breeding and heterosis breeding using germplasm and gene-environment interactions.This paper reviews the breeding strategies of super hybrid rice breeding in China,focusing on the utilization of heterosis of indica and japonica subspecies,construction of ideal plant architecture and pyramiding of disease resistant genes in restorer lines.To develop super hybrid rice,considerable effort should be made to explore genes related with high yield,good quality,resistance to pests and diseases,tolerance to stresses.Molecular breeding methods in combination with crossing techniques should be adopted in super hybrid rice breeding. | Shihua CHENG Xiaodeng ZHAN Liyong CAO | 2015 | Frontiers of Agricultural Science and Engineering2015，2，4： | 1 |
| 10 | Progress in research and development on hybrid rice: A super-domesticate in China显示文摘 | Cheng Shihua Zhuang Jieyun Fan Yeyang | 2007 | Annals of Botany2007，100，5： | 1 |
| 11 | Structure, Evolution, and Expression of the Two Invertase Gene Families of Rice显示文摘 | Xuemei Ji Wim Ende Andre Laere Shihua Cheng John Bennett | 2005 | Journal of Molecular Evolution2005，，5： | 1 |
| 12 | A Comprehensive Survey on STP Approach to Finite Games显示文摘Nowadays the semi-tensor product(STP)approach to finite games has become a promising new direction.This paper provides a comprehensive survey on this prosperous field.After a brief introduction for STP and finite(networked)games,a description for the principle and fundamental technique of STP approach to finite games is presented.Then several problems and recent results about theory and applications of finite games via STP are presented.A brief comment about the potential use of STP to artificial intelligence is also proposed. | CHENG Daizhan WU Yuhu ZHAO Guodong FU Shihua | 2021 | Journal of Systems Science & Complexity2021，34，5： | 1 |
| 13 | A minimum adequate set of multi-valued logic显示文摘An adequate set of k-valued logic is provided,which contains only two operators.It is also proved that this adequate set is of minimum size。 | Daizhan Cheng Jun-e Feng Jianli Zhao Shihua Fu | 2021 | Control Theory and Technology2021，19，4： | 0 |
| 14 | Association Mapping of Quantitative Trait Loci for Grain Size in Introgression Line Derived from Oryza rufipogon显示文摘Grain size is one of the critical agronomic traits governing grain yield and quality in rice.However,the underlying genetic mechanisms that control grain size in rice are poorly understood.We used an introgression line derived from Zhonghui 8015 and Oryza rufipogon Griff.This introgression line was evaluated under two different environmental conditions to dissect the quantitative trait loci controlling grain size.Genome-wide association study(GWAS)was performed using 28193 SNPs through a general linear model,and 56 significant SNPs on different loci associated with the 4 grain size traits were detected.Cloned genes including GS3 and q GL3 showed substantial effects on grain length and size.Seven new stable loci were identified with pleiotropic effects on grain size.Haplotype,gene expression analyses,combined gene-based associations,and functional annotations permitted the shortlisting of important dominant genes including GS3 and q GL3. | Kashif HUSSAIN ZHANG Yingxing Workie ANLEY Aamir RIAZ Adil ABBAS MdHasanuzzaman RANI WANG Hong SHEN Xihong CAO Liyong CHENG Shihua | 2020 | Rice science2020，27，3： | 0 |
| 15 | Response of Freezing/Thawing Indexes to the Wetting Trend under Warming Climate Conditions over the Qinghai–Tibetan Plateau during 1961–2010:A Numerical Simulation显示文摘Since the 1990s,the Qinghai–Tibetan Plateau(QTP)has experienced a strikingly warming and wetter climate that alters the thermal and hydrological properties of frozen ground.A positive correlation between the warming and thermal degradation in permafrost or seasonally frozen ground(SFG)has long been recognized.Still,a predictive relationship between historical wetting under warming climate conditions and frozen ground has not yet been well demonstrated,despite the expectation that it will become even more important because precipitation over the QTP has been projected to increase continuously in the near future.This study investigates the response of the thermal regime to historical wetting in both permafrost and SFG areas and examines their relationships separately using the Community Land Surface Model version 4.5.Results show that wetting before the 1990s across the QTP mainly cooled the permafrost body in the arid and semiarid zones,with significant correlation coefficients of 0.60 and 0.48,respectively.Precipitation increased continually at the rate of 6.16 mm decade–1 in the arid zone after the 1990s but had a contrasting warming effect on permafrost through a significant shortening of the thawing duration within the active layer.However,diminished rainfall in the humid zone after the 1990s also significantly extended the thawing duration of SFG.The relationship between the ground thawing index and precipitation was significantly negatively correlated(−0.75).The dual effects of wetting on the thermal dynamics of the QTP are becoming critical because of the projected increases in future precipitation. | Xuewei FANG Zhi LI Chen CHENG Klaus FRAEDRICH Anqi WANG Yihui CHEN Yige XU Shihua LYU | 2023 | Advances in Atmospheric Sciences2023，40，2： | 0 |
| 16 | QTL Mapping for Plant Height Using Introgression Lines Derived from Zhonghui 8015 and Wild Rice(Oryza rufipogon)显示文摘Many excellent genes in wild rice have been lost during the domestication of wild rice to cultivated rice.In this study,introgression lines(ILs)were produced with a wild rice(Oryza rufipogon)accession,BJ194,as a donor parent and an indica restorer line,Zhonghui 8015(ZH8015),as a recipient parent to map QTLs for plant height.We identified four QTLs(qPH3.1,qPH3.2,qPH2,and qPH8)related to plant height distributed on chromosomes 2,3 and 8.Furthermore,we sequenced and analyzed qPH3.2 located in the interval of RM15753-RM3525,and found this QTL may be a new locus regulating rice plant height. | YANG Qinqin ZHANG Yingxin XUE Pao WEN Xiaoxia LIU Ling XU Peng ZHAN Xiaodeng CAO Liyong CHENG Shihua WU Weixun | 2022 | Rice science2022，29，6： | 0 |
| 17 | Fine mapping and candidate gene analysis of qHD1b,a QTL that promotes flowering in common wild rice(Oryza rufipogon)by up-regulating Ehd1显示文摘Heading date(flowering time)determines the adaptability of cultivars to different environments.We report the fine mapping and candidate gene analysis of qHD1b,a quantitative trait locus(QTL)responsible for early flowering that was derived from common wild rice(O.rufipogon)under both short-day and longday conditions.The introgression line IL7391,which carried segments from common wild rice in a Zhonghui 8015(ZH8015)background,exhibited early heading compared to the background and was crossed with ZH8015 to generate BC_(5)F_(2:3) families for QTL analysis.This enabled the identification of two heading-date QTL,named qHD1b and qHD7,of which the first was selected for further research.High-resolution linkage analysis was performed in BC_(5)F_(4:5) and BC_(5)F_(6) populations,and the location of qHD1b was confined to a 112.7-kb interval containing 17 predicted genes.Five of these genes contained polymorphisms in the promoter or coding regions and were thus considered as candidates.Expression analysis revealed a positive association between LOC_Os01g11940 expression and early heading.This locus was annotated as OsFTL1,which encodes an ortholog of Arabidopsis Flowering Locus T and was the most likely candidate gene for qHD1b.Our study revealed that qHD1b acts as a floral activator that promotes flowering by up-regulating Ehd1,Hd3a,RFT1,OsMADS14,and OsMADS15 under both shortday and long-day conditions.Field experiments showed that qHD1b affected several yield-related agronomic traits including 1000-grain weight and grain length.qHD1b could be useful for marker-assisted selection and breeding of early-maturing cultivars. | Ling Liu Yingxin Zhang Zhengfu Yang Qinqin Yang Yue Zhang Peng Xu Jiaxin Li Anowerul Islam Liaqat Shah Xiaodeng Zhan Liyong Cao Shihua Cheng Weixun Wu | 2022 | The Crop Journal2022，10，4： | 0 |
| 18 | iHypoxia:An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals显示文摘Mammals have evolved mechanisms to sense hypoxia and induce hypoxic responses.Recently,high-throughput techniques have greatly promoted global studies of protein expression changes during hypoxia and the identification of candidate genes associated with hypoxiaadaptive evolution,which have contributed to the understanding of the complex regulatory networks of hypoxia.In this study,we developed an integrated resource for the expression dynamics of proteins in response to hypoxia(iHypoxia),and this database contains 2589 expression events of 1944 proteins identified by low-throughput experiments(LTEs)and 422,553 quantitative expression events of 33,559 proteins identified by high-throughput experiments from five mammals that exhibit a response to hypoxia.Various experimental details,such as the hypoxic experimental conditions,expression patterns,and sample types,were carefully collected and integrated.Furthermore,8788 candidate genes from diverse species inhabiting low-oxygen environments were also integrated.In addition,we conducted an orthologous search and computationally identified 394,141 proteins that may respond to hypoxia among 48 animals.An enrichment analysis of human proteins identified from LTEs shows that these proteins are enriched in certain drug targets and cancer genes.Annotation of known posttranslational modification(PTM)sites in the proteins identified by LTEs reveals that these proteins undergo extensive PTMs,particularly phosphorylation,ubiquitination,and acetylation.iHypoxia provides a convenient and user-friendly method for users to obtain hypoxia-related information of interest. | Ze-Xian Liu Panqin Wang Qingfeng Zhang Shihua Li Yuxin Zhang Yutong Guo Chongchong Jia Tian Shao Lin Li Han Cheng Zhenlong Wang | 2023 | Genomics, Proteomics & Bioinformatics2023，21，2： | 0 |
| 19 | Simulation of Potential Productivity of Early Season Rice Varieties in Different Reqions of South China显示文摘Rice is a staple food crop in China.Since the 1950's,many new varieties havebeen used and resulted in great increase ofyield.However there were still some barriersin the nationwide extension of new varietiesdue to the insufficient information about thecharacteristics of varieties.So,it is impor-tant to find ways of determining the | CHENG Shihua ZHU Defenq ZHANG Xiufu PAN Jun CNRRI,Hangzhou 310006,China | 1990 | Chinese Rice Research Newsletter1990，，1： | 0 |
| 20 | A promising one-step method for rice anther culture显示文摘The general two—step protocol for rice anther culture is time and labor consuming. Since 1982, there have been some papers dealing with a simpler one—step method that plantlets directly regenerate from callus on the initiation mediums which results in avoiding the procedure of callus transplant. So far,it is still difficult to be applied in practice due to their low frequency of direct regeneration. Recently, we successfully increased the frequency of direct plantlet regeneration with phenylacetic acid (PAA), which might make the one-step method practical, particularly for rice breeding and DH population construction. | ZHUO Lisheng,SI Huanmin,CHENG Shihua,and SUN Zongxia,CNRRI,Hangzhou 310006,China | 1995 | Chinese Rice Research Newsletter1995，3，1： | 0 |
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