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| 1 | A journey to understand wheat Fusarium head blight resistance in the Chinese wheat landrace Wangshuibai显示文摘Fusarium head blight(FHB) or scab caused by Fusarium graminearum is a major threat to wheat production in China as well as in the world. To combat this disease, multiple efforts have been carried out internationally. In this article, we review our long-time effort in identifying the resistance genes and dissecting the resistance mechanisms by both forward and reverse genetics approaches in the last two decades. We present recent progress in resistance QTL identification, candidate functional gene discovery, marker-assisted improvement of FHB resistant varieties, and findings in investigating association of signal molecules, such as Ca^(++),SA, JA, and ET, with FHB response, with the assistance from rapidly growing genomics platforms. The information will be helpful for designing novel and efficient approaches to curb FHB. | Haiyan Jia Jiyang Zhou Shulin Xue Guoqiang Li Haisheng Yan Congfu Ran Yiduo Zhang Jinxing Shi Li Jia Xin Wang Jing Luo Zhengqiang Ma | 2018 | The Crop Journal2018，6，1： | 24 |
| 2 | Discrimination of abiogenic and biogenic alkane gases显示文摘We have combined the analytical data of the carbon isotope distribution pattern, R/Ra and CH4/3He values of abiogenic and biogenic (referring to the thermogenic and bacterial or microbial) alkane gases in China with those of alkane gases from USA, Russia, Germany, Australia and other countries. Four discrimination criteria are derived from this comparative study: 1) Carbon isotopic composition is generally greater than -30‰ for abiogenic methane and less than -30‰ for biogenic methane; 2) Abiogenic alkane gases have a carbon isotopic reversal trend (δ 13C1> δ 13C2> δ 13C3> δ 13C4) with δ 13C1>-30‰ in general; 3) Gases with R/Ra >0.5 and δ 13C11 δ 13C2>0 are of abiogenic origin; 4) Gases (meth- ane) with CH4/3He≤106 are of abiogenic origin, whereas gases with CH4/3He≥1011 are of biogenic origin. | DAI JinXing ZOU CaiNeng ZHANG ShuiChang LI Jian NI YunYan HU GuoYi LUO Xia TAO ShiZhen ZHU GuangYou MI JingKui LI ZhiSheng HU AnPing YANG Chun ZHOU QingHua SHUAI YanHua ZHANG Ying MA ChengHua | 2008 | Science China Earth Sciences2008，51，12： | 17 |
| 3 | Tribenuron-Methyl Induces Male Sterility through Anther-Specific Inhibition of Acetolactate Synthase Leading to Autophagic Cell Death显示文摘Tribenuron 甲基(TM ) 是禁止分支链的强大的 sulfonylurea 除草剂由指向 acetolactate synthase (ALS ) 的催化子单元(CSR1 ) 的氨基酸(BCAA ) 生合成。由在低剂量的 TM 的叶的喷洒的男绝育的选择正式就职广泛地在油菜籽(Brassica 马来麝) 为混合种子生产被使用了;然而,内在的机制仍然保持未知。这里,我们 reportgreater TM 累积和在花药的 BCAA 饥饿比在在 TM 申请以后的叶子和茎。csr1-1D (aCSR1 异种) 的组成或花药特定的表示消除了花药选择的 ALS 抑制并且在油菜籽和 Arabidopsis 颠倒了导致 TM 的男无菌的显型。TM 涂抹茎实验的结果,在叶肉或韧皮部由 TM 新陈代谢基因 Bel 的指向的表示在导致 TM 的男绝育的花药和回复与很少 TM 累积的观察结合了,建议叶水花的 TM 通过叶肉和韧皮部主要对花药极运输。显微镜学和 immunoblotting 揭示了那 autophagy,在房间死亡期间导致的一个体积降级过程,在导致 TM 的男无菌的花药并且由被提高花药特定 ALS 击倒。而且,导致 TM 的花粉流产被 autophagy 禁止者 3 麻省显著地禁止。这些数据最终建议 TM 对花药极运输,导致经由花药特定的 ALS 抑制的 BCAA 饥饿并且,,在花药的 autophagic 房间死亡。 | Lun Zhao Xue Jing Li Chen Yingjun Liu Yanan Su Tingting Liu Changbin Gao Bin Yi Jing Wen Chaozhi Ma Jinxing Tu Jitao Zou Tingdong Fu Jinxiong Shen | 2015 | Molecular Plant2015，8，12： | 7 |
| 4 | Bibliometric analysis and system review of vehicle routing optimization for emergency material distribution显示文摘Determining the optimal vehicle routing of emergency material distribution(VREMD)is one of the core issues of emergency management,which is strategically important to improve the effectiveness of emergency response and thus reduce the negative impact of large-scale emergency events.To summarize the latest research progress,we collected 511VREMD-related articles published from 2010 to the present from the Scopus database and conducted a bibliometric analysis using VOSviewer software.Subsequently,we cautiously selected 49 articles from these publications for system review;sorted out the latest research progress in model construction and solution algorithms;and summarized the evolution trend of keywords,research gaps,and future works.The results show that domestic scholars and research organizations held an unqualified advantage regarding the number of published papers.However,these organizations with the most publications performed poorly regarding the number of literature citations.China and the US have contributed the vast majority of the literature,and there are close collaborations between researchers from both countries.The optimization model of VREMD can be divided into single-,multi-,and joint-objective models.The shortest travel time is the most common optimization objective in the single-objective optimization model.Several scholars focus on multiobjective optimization models to consider conflicting objectives simultaneously.In recent literature,scholars have focused on the impact of uncertainty and special events(e.g.,COVID-19)on VREMD.Moreover,some scholars focus on joint optimization models to optimize vehicle routes and central locations(or material allocation)simultaneously.Solution algorithms can be divided into two primary categories,i.e.,mathematical planning methods and intelligent evolutionary algorithms.The branch and bound algorithm is the most dominant mathematical planning algorithm,while genetic algorithms and their enhancements are the most commonly used intelligent evolutionary algorithms.It is shown that the nondominated sorting genetic algorithmⅡ(NSGA-Ⅱ)can effectively solve the multiobjective model of VREMD.To further improve the algorithm’s performance,researchers have proposed improved hybrid intelligent algorithms that combine the advantages of NSGA-Ⅱand certain other algorithms.Scholars have also proposed a series of optimization algorithms for specific scenarios.With the development of new technologies and computation methods,it will be exciting to construct optimization models that consider uncertainty,heterogeneity,and temporality for large-scale real-world issues and develop generalized solution approaches rather than those applicable to specific scenarios. | Jinxing Shen Kun Liu Changxi Ma Yongpeng Zhao Chuwei Shi | 2022 | Journal of Traffic and Transportation Engineering(English Edition)2022，9，6： | 5 |
| 5 | Three-dimensional reconstruction of Picea wilsonii Mast. pollen grains using automated electron microscopy显示文摘Three-dimensional electron microscopy(3 D-EM) has attracted considerable attention because of its ability to provide detailed information with respect to developmental analysis. However, large-scale high-resolution 3 D reconstruction of biological samples remains challenging. Herein, we present a 3 D view of a Picea wilsonii Mast. pollen grain with 100 nm axial and38.57 nm lateral resolution using AutoCUTS-SEM(automatic collector of ultrathin sections-scanning electron microscopy). We established a library of 3,127 100 nm thick serial sections of pollen grains for preservation and observation, demonstrating that the protocol can be used to analyze large-volume samples. After obtaining the SEM images, we reconstructed an entire pollen grain comprising 734 serial sections. The images produced by 3D reconstruction clearly revealed the main components of the P.wilsonii pollen grain, i.e., two sacci and pollen corpus, tube cell, generative cell, and two degenerated prothallial cells, and their internal organization. In addition, we performed a quantitative analysis of the different pollen grain cells, including sacci, and found that there were 202 connections within a saccus SEM image. Thus, for the first time, this study provided a global 3D view of the entire pollen grain, which will be useful for analyzing pollen development and growth. | Weiwei Shen Lingyu Ma Xi Zhang Xixia Li Yuanyuan Zhao Yanping Jing Yun Feng Xueke Tan Fei Sun Jinxing Lin | 2020 | Science China(Life Sciences)2020，63，2： | 3 |
| 6 | Plant multiscale networks:charting plant connectivity by multi-level analysis and imaging techniques显示文摘In multicellular and even single-celled organisms,individual components are interconnected at multiscale levels to produce enormously complex biological networks that help these systems maintain homeostasis for development and environmental adaptation.Systems biology studies initially adopted network analysis to explore how relationships between individual components give rise to complex biological processes.Network analysis has been applied to dissect the complex connectivity of mammalian brains across different scales in time and space in The Human Brain Project.In plant science,network analysis has similarly been applied to study the connectivity of plant components at the molecular,subcellular,cellular,organic,and organism levels.Analysis of these multiscale networks contributes to our understanding of how genotype determines phenotype.In this review,we summarized the theoretical framework of plant multiscale networks and introduced studies investigating plant networks by various experimental and computational modalities.We next discussed the currently available analytic methodologies and multi-level imaging techniques used to map multiscale networks in plants.Finally,we highlighted some of the technical challenges and key questions remaining to be addressed in this emerging field. | Xi Zhang Yi Man Xiaohong Zhuang Jinbo Shen Yi Zhang Yaning Cui Meng Yu Jingjing Xing Guangchao Wang Na Lian Zijian Hu Lingyu Ma Weiwei Shen Shunyao Yang Huimin Xu Jiahui Bian Yanping Jing Xiaojuan Li Ruili Li Tonglin Mao Yuling Jiao Sodmergen Haiyun Ren Jinxing Lin | 2021 | Science China(Life Sciences)2021，64，9： | 3 |
| 7 | The Brassica napus GATA transcription factor BnA5.ZML1 is a stigma compatibility factor显示文摘Self-incompatibility(SI)is a genetic mechanism that rejects self-pollen and thus prevents inbreeding in some hermaphroditic angiosperms.In the Brassicaceae,SI involves a pollen-stigma recognition system controlled by a single locus known as the S locus,which consists of two highly polymorphic genes that encode S-locus cysteine-rich protein(SCR)and S-receptor kinase(SRK).When self-pollen lands on the stigma,the S-haplotype-specific interaction between SCR and SRK triggers SI.Here,we show that the GATA transcription factor BnA5.ZML1 suppresses SI responses in Brassica napus and is induced after compatible pollination.The loss-of-function mutant bna5.zml1 displays reduced self-compatibility.In contrast,overexpression of BnA5.ZML1 in self-incompatible stigmas leads to a partial breakdown of SI responses,suggesting that BnA5.ZML1 is a stigmatic compatibility factor.Furthermore,the expression levels of SRK and ARC1 are up-regulated in bna5.zml1 mutants,and they are down-regulated in BnA5.ZML1 overexpressing lines.SRK affects the cellular localization of BnA5.ZML1 through direct protein–protein interaction.Overall,our findings highlight the fundamental role of BnA5.ZML1 in SI responses in B.napus,establishing a direct interaction between BnA5.ZML1 and SRK in this process. | Zhiqiang Duan Yatao Zhang Jinxing Tu Jinxiong Shen Bin Yi Tingdong Fu Cheng Dai Chaozhi Ma | 2020 | Journal of Integrative Plant Biology2020，62，8： | 2 |
| 8 | Bn.YCO affects chloroplast development in Brassica napus L.显示文摘Mature chloroplasts,as the main sites of photosynthesis,are essential for seedling growth in higher plants.Loss of function of genes involved in chloroplast development changes plant phenotype.We obtained a YELLOW COTYLEDON (YCO) mutant in rapeseed (Brassica napus L.) using CRISPR-Cas9.Bn.YCO,a gene of unknown function,has two homologous copies (Bna A01.YCO and Bna C01.YCO) in B.napus.Homozygous mutation of these two homologs resulted in yellow cotyledons and chlorotic true leaves.Transmission electron microscopy revealed that the formation of thylakoid membranes was inhibited in yellow cotyledons.Sequence similarity search revealed that YCO was conserved in different species,and a subcellular location assay verified that Bn.YCO was located in the chloroplast.Bn.YCO was expressed in multiple tissues,most highly in cotyledons.Knockout of Bn.YCO blocked the transcription of plastid genes,especially those of photosystem genes transcribed by plastid-encoded polymerase.Transcriptome sequencing showed that the majority of genes involved in ribosome assembly and photosynthesis were down-regulated in Bn.yco mutants.These results suggested that loss of function of Bn.YCO affected plastid gene transcription,which influenced chloroplast biogenesis in rapeseed seedlings. | Tingting Liu Baolong Tao Hanfei Wu Jing Wen Bin Yi Chaozhi Ma Jinxing Tu Tingdong Fu Lixia Zhu Jinxiong Shen | 2021 | The Crop Journal2021，9，5： | 1 |
| 9 | Molecular markers linked to Bn;rf: a recessive epistatic inhibitor gene of recessive genic male sterility in Brassica napus L.显示文摘 | Lu Xiao Bin Yi Yufeng Chen Zhen Huang Wei Chen Chaozhi Ma Jinxing Tu Tingdong Fu | 2008 | Euphytica2008，，2： | 1 |
| 10 | Towards map-based cloning: fine mapping of a recessive genic male-sterile gene (BnMs2) in Brassica napus L. and syntenic region identification based on the Arabidopsis thaliana genome sequences显示文摘 | Shaolin Lei Xueqin Yao Bin Yi Wei Chen Chaozhi Ma Jinxing Tu Tingdong Fu | 2007 | Theoretical and Applied Genetics2007，，5： | 1 |
| 11 | Fine mapping of the recessive genic male sterility gene (Bnms3) in Brassica napus L.显示文摘 | Zhen Huang Yufeng Chen Bin Yi Lu Xiao Chaozhi Ma Jinxing Tu Tingdong Fu | 2007 | Theoretical and Applied Genetics2007，，1： | 1 |
| 12 | Mapping of BnMs4 and BnRf to a common microsyntenic region of Arabidopsis thaliana chromosome 3 using intron polymorphism markers显示文摘 | Shengqian Xia Ling Cheng Feng Zu Xiaoling Dun Zhengfu Zhou Bin Yi Jing Wen Chaozhi Ma Jinxiong Shen Jinxing Tu Tingdong Fu | 2012 | Theoretical and Applied Genetics2012，，7： | 1 |
| 13 | Autonomous bus services:current research status and future recommendations显示文摘Implementing autonomous bus services in several cities has garnered substantial research attention worldwide.However,the benefits and challenges of this emerging mode remain insufficiently understood.Consequently,VOSviewer was employed for a bibliometric analysis involving 300 publications,investigating the associations among authors,journals,and keywords.Subsequently,we comprehensively reviewed the current state of research on two topics and proposed future recommendations.Results indicate that the first document related to autonomous bus services was published in 2009.Most user attitude-related research data are obtained via questionnaires and analyzed using statistical techniques.Autonomous bus services are expected to benefit passengers regarding travel time,cost,safety,etc.,while passenger preferences are inconsistent.However,integrating the service into existing bus systems requires careful consideration of the schedule sequences.Notably,modular autonomous bus services present a new opportunity for the further optimization of bus services.In future studies,standardized data acquisition procedures should be developed to achieve comparable results.Regarding traveler choice behavior,the effect of specific autonomous bus service policies over time and the heterogeneity due to cultural or social contexts across regions should be assessed.To further promote autonomous bus services,based on fluctuating travel demands,the effects of vehicle capacity,speed,and cost of fleet composition should be evaluated comprehensively to optimize the bus network and schedule sequence.Owing to the protracted nature of the transition from conventional to fully autonomous buses,one should prioritize semi-autonomous bus services.Another essential future research direction is to integrate modular autonomous bus assembly or disassembly strategies with different fine-grained operation optimization techniques in various scenarios. | Jinxing Shen Qinxin Liu Zi Ye Wenfeng Jiang Changxi Ma | 2023 | Digital Transportation and Safety2023，2，3： | 1 |
| 14 | A comparative assessment of ensemble learning for credit scoring显示文摘 | Gang Wang Jinxing Hao Jian Ma Hongbing Jiang | 2011 | Expert Systems with Applications2011，38，： | 1 |
| 15 | A separation defect of tapetum cells and microspore mother cells results in male sterility in Brassica napus: the role of abscisic acid in early anther development显示文摘 | Yun Zhu Xiaoling Dun Zhengfu Zhou Shengqian Xia Bin Yi Jing Wen Jinxiong Shen Chaozhi Ma Jinxing Tu Tingdong Fu | 2010 | Plant Molecular Biology (-)2010，，1： | 1 |
| 16 | Genetic characterization of a new cytoplasmic male sterility system (hau) in Brassica juncea and its transfer to B. napus显示文摘 | Zhengjie Wan Bing Jing Jinxing Tu Caozhi Ma Jinxiong Shen Bin Yi Jing Wen Tao Huang Xianjun Wang Tingdong Fu | 2008 | Theoretical and Applied Genetics2008，，3： | 1 |
| 17 | A new approach to intrusion detection using artificial neural networks and fuzzy clustering 显示文摘 | Wang Gang Hao Jinxing Ma Jian | 2010 | Expert SystAppl2010，37，9： | 1 |
| 18 | Combining social network and semantic concept analysis for personalized academic researcher recommendation显示文摘 | Yunhong Xu Xitong Guo Jinxing Hao Jian Ma Raymond Y.K. Lau Wei Xu | 2012 | Decision Support Systems2012，，1： | 1 |
| 19 | Analysis of the Geometrical Specification Model Based on the New Geometrical Product Specification Language 显示文摘 | MA Limin WANG Jinxing JIANG Xiangqian et al | 2004 | Journal of Shanghai University2004，，： | 1 |
| 20 | Towards map-based cloning: fine mapping of a recessive genic male-sterile gene (BnMs2) in Brassica napus L. and syntenic region identification based on the Arabidopsis thaliana genome sequences显示文摘 | Shaolin Lei Xueqin Yao Bin Yi Wei Chen Chaozhi Ma Jinxing Tu Tingdong Fu | 2007 | Theoretical and Applied Genetics2007，，5： | 1 |
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